Publications

Here are publications from the team. See below for theses and reports.

Quantifying the rise and fall of scientific fields

Singh, C., Barme, E., Ward, R., Tupikina, L., Santolini, M., (2022)
PLOS ONE (Web) (PDF)

An Epistemology for Democratic Citizen Science

Jaeger J., Masselot C., Greshake Tzovaras B., Senabre Hidalgo E., Haklay M., Santolini M., (2022)
OSF Preprints (Web) (PDF)

Education-based grant programmes for bottom-up distance learning and project catalysis: Antimicrobial Resistance in Sub-Saharan Africa

Graham C. L. B , Akligoh H., King’Ori J., Adzaho G., Salekwa L., Campbell P., Saba C. K. S., Landrain T. E., Santolini M., (2022)
AfricArXiv (Web) (PDF)

Extitutional Theory: Modeling Structured Social Dynamics Beyond Institutions

De Filippi P., Santolini M. (2022)
Ephemera: Theory and Politics in Organization (Web) (PDF)

Community review: a robust and scalable selection system for resource allocation within open science and innovation communities

Graham C. L. B., Landrain T. E., Vjestica A., Greshake Tzovoras B., Masselot C., Lawton E., Haenel L., Blondel L., Santolini M. (2022)
BioRxiv (Web) (PDF)

Detection of Spatiotemporal Clusters of COVID-19–Associated Symptoms and Prevention Using a Participatory Surveillance App: Protocol for the@ choum Study

De Ridder, D,, Loizeau A. J., Sandoval, J. L., Ehrler, F., Perrier M., Ritch A., Violot G., Santolini M., Greshake Tzovaras B., Stringhini, S., Kaiser L., Pradeau J. F., Joost S., Guessous I. (2022)
JMIR research protocols (Web) (PDF)

Quantified Us: a group-in-the-loop approach to team network reconstruction

Tackx, R., Blondel, L, Santolini, M., (2021)
Proceedings of ACM International Joint Conference on Pervasive and Ubiquitous Computing (Web) (PDF)

Uncovering the fragility of large-scale engineering project networks

Santolini, M., Ellinas,C. and Nicolaides,C. (2021)
EPJ Data Science (Web) (PDF)

Network-based response module comprised of gene expression biomarkers predicts response to infliximab at treatment initiation in ulcerative colitis

Ghiassian S. D., Withers J. B., Santolini M., Saleh A., Akmaev V. R. (2021)
Translational Research (Web) (PDF)

Implementing the Co-Immune Open Innovation Program to Address Vaccination Hesitancy and Access to Vaccines: Retrospective Study

Masselot C. M., Greshake Tzovaras B.,Graham C. L. B., Finnegan G., Jeyaram R., Vitali I., Landrain T. E., Santolini M., (2021)
Journal of Participatory Medicine (Web) (PDF)

Proteomic Analysis Uncovers Measles Virus Protein C
Interaction With p65–iASPP Protein Complex

Meignié A., Combredet C., Santolini M., Kovács I. A., Douché T., Giai Gianetto Q., Eun H., Matondo M., Jacob Y., Grailhe R., Tangy F., Komarova A. V., (2021)
Molecular and Cellular Proteomics (Web) (PDF)

Clinical Validation of a Blood-Based Predictive Test for Stratification of Response to Tumor Necrosis Factor Inhibitor Therapies in Rheumatoid Arthritis Patients.

Mellors, T., Withers, J.B., Ameli, A., Jones, A., Wang, M., Zhang, L., Sanchez, H.N., Santolini, M., Do Valle, I., Sebek, M., et al. (2020)
Network and Systems Medicine (Journal Page) (PDF)

COVID-19 and beyond: a call for action and audacious solidarity to all the citizens and nations, it is humanity’s fight.


 Auffray et al. (2020)
F1000Research (Journal Page) (PDF)

Are Forum Networks Social Networks? A Methodological Perspective.

O. Poquet, L. Tupikina, and M. Santolini (2020)
Learning Analytics and Knowledge (LAK ’20), Frankfurt, Germany. (Journal Page) (PDF)

Mechanical forces induce an asthma gene signature in healthy airway epithelial cells.

A. Kılıç, A. Ameli, J-A Park, A Koh, K Tantisira, M. Santolini, F. Cheng, J. Mitchel, M. McGill, A. Sharma, S. H Randell, J. M Drazen, J. Fredberg, and S. T. Weiss. (2020)
Scientific Reports  (Journal Page) (PDF)

The periphery and the core properties explain the omnigenic model in the human interactome.

B Wang, K Glass, A Röhl, M Santolini, D.C. Croteau-Chonka, S. T. Weiss, B. A. Raby, A. Sharma. (2019)
bioRxiv. (Web) (PDF)

The Ca2+ transient as a feedback sensor controlling cardiomyocyte ionic conductances in mouse populations.

C. Rees, JH Yang, M. Santolini, JN Weiss and A. Karma. (2018)
eLife. (Journal Page) (PDF)

Integration of Molecular Interactome and Targeted Interaction Analysis to Identify a COPD Disease module.

A. Sharma, M. Kitsak, M. Cho, A. Ameli, X. Zhou, Z. Jiang, J D Crapo, T beaty, J. Menche, P S Bakke, M. Santolini, E. K. Silverman. (2018)
Scientific Reports. (Journal Page) (PDF)

Predicting perturbation patterns from the topology of biological networks.

M. Santolini, A-L Barabasi, (2018)
PNAS. (Journal Page) (PDF)

A systems immunology approach identifies the collective impact of 5 miRs in Th2 inflammation.

A. Kilic, M. Santolini, A. Al Garawi, S. Uchida, H. Renz, S. T. Weiss, A. Sharma. (2018)
JCI Insight (Journal Page) (PDF)

Epidemium: A multidisciplinary community to tackle cancer using big and open data.

Mehdi Benchoufi, Marc Fournier, David Magrez, Gaspard Macaux, Vanessa Barue, Alicia Mansilla Sanchez, Olivier de Fresnoye, Romain Fillaudeau, Ozanne Tauvel-Mocquet, Nassera Chalabi, Jean Frédéric Petit-Nivard, Leo Blondel, Marc Santolini, Béchir Ben Hadj Yahia (2018)
Journal of Clinical Oncology (Journal Page) (PDF)

Theses / reports

The Online Transition of the Geneva-Tsinghua Initiative SDG Summer School

Stephanie Chuah (2020)
GTI-CRI Internship Report (PDF)

Understanding how Teams Interact – An Analysis of Teams in an International Science and Engineering Competition

Rathin Jeyaram (2020)
Masters Theses (PDF)

Analyse des symptômes autodéclarés du COVID19 sur Twitter

Naïla EL HAOUARI (2020)
ENSAE Master’s thesis (PDF)

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