Publications

Here are publications from the team. See below for theses and reports.

Quantified Us: a group-in-the-loop approach to team network reconstruction

Tackx, R., Blondel, L, Santolini, M., (2021)
Proceedings of ACM International Joint Conference on Pervasive and Ubiquitous Computing (Web) (PDF)

Quantifying the rise and fall of scientific fields

Singh, C., Barme, E., Ward, R., Tupikina, L., Santolini, M., (2021)
arXiv (Web) (PDF)

Uncovering the fragility of large-scale engineering project networks

Santolini, M., Ellinas,C. and Nicolaides,C. (2021)
EPJ Data Science: 10, Article number: 36 (Web) (PDF)

Network-based response module comprised of gene expression biomarkers predicts response to infliximab at treatment initiation in ulcerative colitis

Ghiassian S. D., Withers J. B., Santolini M., Saleh A., Akmaev V. R. (2021)
Translational Research (Web) (PDF)

Co-Immune: a case study on open innovation
for vaccination hesitancy and access

Masselot C. M., Greshake Tzovaras B.,Graham C. L. B., Finnegan G., Jeyaram R., Vitali I., Landrain T. E., Santolini M., (2021)
Journal of Participatory Medicine (Web) (PDF)

Proteomic Analysis Uncovers Measles Virus Protein C
Interaction With p65–iASPP Protein Complex

Meignié A., Combredet C., Santolini M., Kovács I. A., Douché T., Giai Gianetto Q., Eun H., Matondo M., Jacob Y., Grailhe R., Tangy F., Komarova A. V., (2021)
Molecular and Cellular Proteomics 20: 100049 (Web) (PDF)

Clinical Validation of a Blood-Based Predictive Test for Stratification of Response to Tumor Necrosis Factor Inhibitor Therapies in Rheumatoid Arthritis Patients.

Mellors, T., Withers, J.B., Ameli, A., Jones, A., Wang, M., Zhang, L., Sanchez, H.N., Santolini, M., Do Valle, I., Sebek, M., et al. (2020)
Network and Systems Medicine, 3, 91–104. (Journal Page) (PDF)

COVID-19 and beyond: a call for action and audacious solidarity to all the citizens and nations, it is humanity’s fight.


 Charles Auffray, Rudi Balling, Niklas Blomberg, MYRNA BONALDO, Bertrand Boutron, Samir Brahmachari, Christian Bréchot, Alfredo Cesario, Sai-Juan Chen, Karine Clément, Daria Danilenko, Alberto Di Meglio, Andrea Gelemanovic, Carole Goble, Takashi Gojobori, Jason D Goldman, Michel Goldman, Yi-Ke Guo, James Heath, Leroy Hood, Peter Hunter, Li Jin, Hiroaki Kitano, Bartha Maria Knoppers, Doron Lancet, Catherine Larue, Mark Lathrop, Martine Laville, Ariel B Lindner, Antoine Magnan, Andres Metspalu, Edgar Morin, Lisa FP Ng, Laurent Nicod, Denis Noble, Laurent Nottale, Helga Nowotny, Iruna Okeke, Tolu Oni, Peter Openshaw, Mehmet Oztürk, Susanna Palkonen, Janusz Paweska, Christophe Pison, Mihael Polymeropoulos, Christian Pristipino, Ulrike Protzer, Josep Roca, Damjana Rozman, Marc Santolini, Ferran Sanz, Giovanni Scambia, Eran Segal, Ismail Serageldin, Marcelo Bento Soares, Peter Sterk, Sumio Sugano, Julio Superti-Furga, David Supple, Jesper Tegnér, Mathias Uhlen, Andrea Urbani, Alfonso Valencia, Vincenzo Valentini, Sylvie van der Werf, Manlio Vinciguerra, Olaf Wolkenhauer, Emiel Wouters. (2020)
F1000Research, 9:1130. (Journal Page) (PDF)

Are Forum Networks Social Networks? A Methodological Perspective.

O. Poquet, L. Tupikina, and M. Santolini (2020)
Learning Analytics and Knowledge (LAK ’20), Frankfurt, Germany. (Journal Page) (PDF)

Mechanical forces induce an asthma gene signature in healthy airway epithelial cells.

A. Kılıç, A. Ameli, J-A Park, A Koh, K Tantisira, M. Santolini, F. Cheng, J. Mitchel, M. McGill, A. Sharma, S. H Randell, J. M Drazen, J. Fredberg, and S. T. Weiss. (2020)
Scientific Reports 10, Article number: 966  (Journal Page) (PDF)

The periphery and the core properties explain the omnigenic model in the human interactome.

B Wang, K Glass, A Röhl, M Santolini, D.C. Croteau-Chonka, S. T. Weiss, B. A. Raby, A. Sharma. (2019)
bioRxiv. (Web) (PDF)

The Ca2+ transient as a feedback sensor controlling cardiomyocyte ionic conductances in mouse populations.

C. Rees, JH Yang, M. Santolini, JN Weiss and A. Karma. (2018)
eLife. (Journal Page) (PDF)

Integration of Molecular Interactome and Targeted Interaction Analysis to Identify a COPD Disease module.

A. Sharma, M. Kitsak, M. Cho, A. Ameli, X. Zhou, Z. Jiang, J D Crapo, T beaty, J. Menche, P S Bakke, M. Santolini, E. K. Silverman. (2018)
Scientific Reports. (Journal Page) (PDF)

Predicting perturbation patterns from the topology of biological networks.

M. Santolini, A-L Barabasi, (2018)
PNAS. (Journal Page) (PDF)

A systems immunology approach identifies the collective impact of 5 miRs in Th2 inflammation.

A. Kilic, M. Santolini, A. Al Garawi, S. Uchida, H. Renz, S. T. Weiss, A. Sharma. (2018)
JCI Insight (Journal Page) (PDF)

Epidemium: A multidisciplinary community to tackle cancer using big and open data.

Mehdi Benchoufi, Marc Fournier, David Magrez, Gaspard Macaux, Vanessa Barue, Alicia Mansilla Sanchez, Olivier de Fresnoye, Romain Fillaudeau, Ozanne Tauvel-Mocquet, Nassera Chalabi, Jean Frédéric Petit-Nivard, Leo Blondel, Marc Santolini, Béchir Ben Hadj Yahia (2018)
Journal of Clinical Oncology (Journal Page) (PDF)

Theses / reports

The Online Transition of the Geneva-Tsinghua Initiative SDG Summer School

Stephanie Chuah (2020)
GTI-CRI Internship Report (PDF)

Understanding how Teams Interact – An Analysis of Teams in an International Science and Engineering Competition

Rathin Jeyaram (2020)
Masters Theses (PDF)

Analyse des symptômes autodéclarés du COVID19 sur Twitter

Naïla EL HAOUARI (2020)
ENSAE Master’s thesis (PDF)

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